RESEARCH SUMMARY

Reproducibility is a core component of the scientific process: it helps researchers all around the world to verify the results and also to build on them, alowing science to move forward. In natural science, long tradition requires experiments to be described in enough detail so that they can be reproduced by researchers around the world. The same standard, however, has not been widely applied to computational science, where researchers often have to rely on plots, tables, and figures included in papers, which loosely describe the obtained results.

The truth is computational reproducibility can be very painful to achieve for a number of reasons. Take the author-reviewer scenario of a scientific paper as an example. Authors must generate a compendium that encapsulates all the inputs needed to correctly reproduce their experiments: the data, a complete specification of the experiment and its steps, and information about the originating computational environment (OS, hardware architecture, and library dependencies). Keeping track of this information manually is rarely feasible: it is both time-consuming and error-prone. First, computational environments are complex, consisting of many layers of hardware and software, and the configuration of the OS is often hidden. Second, tracking library dependencies is challenging, especially for large experiments. If authors did not plan for it since the beginning of the project, reproducibility is drastically hampered.

For reviewers, even with a compendium in their hands, it may be hard to reproduce the results. There may be no instructions about how to execute the code and explore it further; the experiment may not run on his operating system; there may be missing libraries; library versions may be different; and several issues may arise while trying to install all the required dependencies, a problem colloquially known as dependency hell.

ReproZip helps alleviate these problems by allowing the user to easily capture all the necessary components in a single, distributable package. Also, the tool makes it easier to reproduce an experiment by providing different unpacking methods and interfaces: this avoids the need to install all the required dependencies and makes it possible to run the experiment in different operating systems and under different inputs. In addition, ReproZip also generates a workflow specification for the experiment which reviewers can use to explore the experiment and try different configurations, while maintaining the provenance of the review process.

Click here for more details on ReproZip

 

Packing and Unpacking Steps

architecture_background

 

Workflow Specification

workflow_extension

 

 

 

 

 

Moore Sloan Poster Research Project